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        <a href="headset-module.html">Package&nbsp;headset</a> ::
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        Module&nbsp;Model
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<h1 class="epydoc">Source Code for <a href="headset.model.Model-module.html">Module headset.model.Model</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno">  1</tt>  <tt class="py-line"><tt class="py-docstring">'''</tt> </tt>
<a name="L2"></a><tt class="py-lineno">  2</tt>  <tt class="py-line"><tt class="py-docstring">        The model module defines the model. The model is contains a collections</tt> </tt>
<a name="L3"></a><tt class="py-lineno">  3</tt>  <tt class="py-line"><tt class="py-docstring">        of geoms. These collection of geoms share certain properties like their</tt> </tt>
<a name="L4"></a><tt class="py-lineno">  4</tt>  <tt class="py-line"><tt class="py-docstring">        color. For convience a number of accesors are defined to make life in the </tt> </tt>
<a name="L5"></a><tt class="py-lineno">  5</tt>  <tt class="py-line"><tt class="py-docstring">        higher layers of the system more bearable.</tt> </tt>
<a name="L6"></a><tt class="py-lineno">  6</tt>  <tt class="py-line"><tt class="py-docstring">        </tt> </tt>
<a name="L7"></a><tt class="py-lineno">  7</tt>  <tt class="py-line"><tt class="py-docstring">        @author: J.H. Donker, J.Teeuw, S.G. Epskamp</tt> </tt>
<a name="L8"></a><tt class="py-lineno">  8</tt>  <tt class="py-line"><tt class="py-docstring">        @organization: Twente University</tt> </tt>
<a name="L9"></a><tt class="py-lineno">  9</tt>  <tt class="py-line"><tt class="py-docstring">'''</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt>  <tt class="py-line"> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">wx</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt>  <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">vtk</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt>  <tt class="py-line"> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Class headset.model.HeaDSETCube'.HeaDSETCube=headset.model.HeaDSETCube%27.HeaDSETCube-class.html"><a title="headset.model.HeaDSETCube'.HeaDSETCube" class="py-name" href="#" onclick="return doclink('link-0', 'HeaDSETCube', 'link-0');">HeaDSETCube</a></tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Class headset.model.HeaDSETSphere'.HeaDSETSphere=headset.model.HeaDSETSphere%27.HeaDSETSphere-class.html"><a title="headset.model.HeaDSETSphere'.HeaDSETSphere" class="py-name" href="#" onclick="return doclink('link-1', 'HeaDSETSphere', 'link-1');">HeaDSETSphere</a></tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name" targets="Class headset.model.HeaDSETCone'.HeaDSETCone=headset.model.HeaDSETCone%27.HeaDSETCone-class.html"><a title="headset.model.HeaDSETCone'.HeaDSETCone" class="py-name" href="#" onclick="return doclink('link-2', 'HeaDSETCone', 'link-2');">HeaDSETCone</a></tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name" targets="Class headset.model.HeaDSETCylinder'.HeaDSETCylinder=headset.model.HeaDSETCylinder%27.HeaDSETCylinder-class.html"><a title="headset.model.HeaDSETCylinder'.HeaDSETCylinder" class="py-name" href="#" onclick="return doclink('link-3', 'HeaDSETCylinder', 'link-3');">HeaDSETCylinder</a></tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt>  <tt class="py-line"> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">dom</tt><tt class="py-op">.</tt><tt class="py-name">minidom</tt> <tt class="py-keyword">import</tt> <tt class="py-op">*</tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name" targets="Package headset.util=headset.util-module.html"><a title="headset.util" class="py-name" href="#" onclick="return doclink('link-4', 'util', 'link-4');">util</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Module headset.util.XmlUtil=headset.util.XmlUtil-module.html"><a title="headset.util.XmlUtil" class="py-name" href="#" onclick="return doclink('link-5', 'XmlUtil', 'link-5');">XmlUtil</a></tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt>  <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">wx</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt><tt class="py-op">.</tt><tt class="py-name">pubsub</tt> <tt class="py-keyword">import</tt> <tt id="link-6" class="py-name" targets="Variable headset.Main.Publisher=headset.Main-module.html#Publisher,Variable headset.Publisher=headset-module.html#Publisher,Variable headset.gui.Publisher=headset.gui-module.html#Publisher,Variable headset.gui.VTKComponent'.Publisher=headset.gui.VTKComponent%27-module.html#Publisher,Variable headset.gui.VTKInteractor'.Publisher=headset.gui.VTKInteractor%27-module.html#Publisher,Variable headset.gui.VTKView'.Publisher=headset.gui.VTKView%27-module.html#Publisher,Variable headset.model.HeaDSETCone'.Publisher=headset.model.HeaDSETCone%27-module.html#Publisher,Variable headset.model.HeaDSETCube'.Publisher=headset.model.HeaDSETCube%27-module.html#Publisher,Variable headset.model.HeaDSETCylinder'.Publisher=headset.model.HeaDSETCylinder%27-module.html#Publisher,Variable headset.model.HeaDSETDicom'.Publisher=headset.model.HeaDSETDicom%27-module.html#Publisher,Variable headset.model.HeaDSETGeom'.Publisher=headset.model.HeaDSETGeom%27-module.html#Publisher,Variable headset.model.HeaDSETSphere'.Publisher=headset.model.HeaDSETSphere%27-module.html#Publisher,Variable headset.model.Publisher=headset.model-module.html#Publisher,Variable headset.peripherals.OutputController'.Publisher=headset.peripherals.OutputController%27-module.html#Publisher,Variable headset.peripherals.OutputInstrumentRecording'.Publisher=headset.peripherals.OutputInstrumentRecording%27-module.html#Publisher,Variable headset.peripherals.OutputJournal'.Publisher=headset.peripherals.OutputJournal%27-module.html#Publisher,Variable headset.peripherals.Publisher=headset.peripherals-module.html#Publisher,Variable headset.util.Publisher=headset.util-module.html#Publisher,Variable headset.util.Snake'.Publisher=headset.util.Snake%27-module.html#Publisher"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-6', 'Publisher', 'link-6');">Publisher</a></tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel"></a><div id="HeaDSETModel-def"><a name="L23"></a><tt class="py-lineno"> 23</tt> <a class="py-toggle" href="#" id="HeaDSETModel-toggle" onclick="return toggle('HeaDSETModel');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html">HeaDSETModel</a><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="HeaDSETModel-expanded"><a name="L24"></a><tt class="py-lineno"> 24</tt>  <tt class="py-line">        <tt class="py-docstring">'''</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt>  <tt class="py-line"><tt class="py-docstring">                The HeaDSETModel is a wrapper for the collections of geoms. It handles</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt>  <tt class="py-line"><tt class="py-docstring">                these list genericly. And provides hooks for the VTK components for them</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt>  <tt class="py-line"><tt class="py-docstring">                to maintain state. The model has two modes ModelMode and NonModelMode. </tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt>  <tt class="py-line"><tt class="py-docstring">                In Model mode the system will not allow mutations to the tumor and safe</tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt>  <tt class="py-line"><tt class="py-docstring">                path geoms.</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt>  <tt class="py-line"><tt class="py-docstring">        '''</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt>  <tt class="py-line">        <tt id="link-7" class="py-name" targets="Variable headset.model.Model.HeaDSETModel.TUMOR=headset.model.Model.HeaDSETModel-class.html#TUMOR"><a title="headset.model.Model.HeaDSETModel.TUMOR" class="py-name" href="#" onclick="return doclink('link-7', 'TUMOR', 'link-7');">TUMOR</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"Tumor"</tt> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt>  <tt class="py-line">        <tt id="link-8" class="py-name" targets="Variable headset.model.Model.HeaDSETModel.PATH=headset.model.Model.HeaDSETModel-class.html#PATH"><a title="headset.model.Model.HeaDSETModel.PATH" class="py-name" href="#" onclick="return doclink('link-8', 'PATH', 'link-8');">PATH</a></tt>  <tt class="py-op">=</tt> <tt class="py-string">"Safe path"</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt>  <tt class="py-line">        <tt id="link-9" class="py-name" targets="Variable headset.model.Model.HeaDSETModel.PATH_SAVE=headset.model.Model.HeaDSETModel-class.html#PATH_SAVE"><a title="headset.model.Model.HeaDSETModel.PATH_SAVE" class="py-name" href="#" onclick="return doclink('link-9', 'PATH_SAVE', 'link-9');">PATH_SAVE</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"Safe_path"</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.__init__"></a><div id="HeaDSETModel.__init__-def"><a name="L35"></a><tt class="py-lineno"> 35</tt> <a class="py-toggle" href="#" id="HeaDSETModel.__init__-toggle" onclick="return toggle('HeaDSETModel.__init__');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.__init__-expanded"><a name="L36"></a><tt class="py-lineno"> 36</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt>  <tt class="py-line"><tt class="py-docstring">                        The constructor for the class initialises the standard lists and</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt>  <tt class="py-line"><tt class="py-docstring">                        individual geoms. It also defines te standard colors for the different</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt>  <tt class="py-line"><tt class="py-docstring">                        geom collections</tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt>      </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt>  <tt class="py-line">                <tt class="py-comment"># init model</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> <tt class="py-comment"># NOTE: singular!</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L45"></a><tt class="py-lineno"> 45</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__mode</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt>  </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt>  <tt class="py-line">                 </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt>  <tt class="py-line">                 </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__pathColor</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumorColor</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrumentColor</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">0</tt><tt class="py-op">,</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt>  <tt class="py-line">                 </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__recordings</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
</div><a name="L54"></a><tt class="py-lineno"> 54</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.__addGeom"></a><div id="HeaDSETModel.__addGeom-def"><a name="L55"></a><tt class="py-lineno"> 55</tt> <a class="py-toggle" href="#" id="HeaDSETModel.__addGeom-toggle" onclick="return toggle('HeaDSETModel.__addGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#__addGeom">__addGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">list</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.__addGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.__addGeom-expanded"><a name="L56"></a><tt class="py-lineno"> 56</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt>  <tt class="py-line"><tt class="py-docstring">                        Private method to add a geom to a collection and to notify</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt>  <tt class="py-line"><tt class="py-docstring">                        the view that a geom has been added. </tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt>  <tt class="py-line"><tt class="py-docstring">                        @param list: The internal collection that will be modified.</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be added to the specified list.</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt>  <tt class="py-line">                <tt class="py-comment">##print "adding geom"</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-comment"># add to list</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">list</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt>  <tt class="py-line">                 </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt>  <tt class="py-line">                <tt class="py-comment"># add to view</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-comment">#actor = geom.GetActor()</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt id="link-10" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-10', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"GeomAdded"</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
</div><a name="L70"></a><tt class="py-lineno"> 70</tt>  <tt class="py-line">         </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.__removeGeom"></a><div id="HeaDSETModel.__removeGeom-def"><a name="L72"></a><tt class="py-lineno"> 72</tt> <a class="py-toggle" href="#" id="HeaDSETModel.__removeGeom-toggle" onclick="return toggle('HeaDSETModel.__removeGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#__removeGeom">__removeGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">list</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.__removeGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.__removeGeom-expanded"><a name="L73"></a><tt class="py-lineno"> 73</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt>  <tt class="py-line"><tt class="py-docstring">                        Private method to remove geom from a collection. The function</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt>  <tt class="py-line"><tt class="py-docstring">                        also notifies the view of the removal of the geom.</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt>  <tt class="py-line"><tt class="py-docstring">                        @param list: The internal collection that will be modified.</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be removed from the specified list.</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt>  <tt class="py-line">                <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt>  <tt class="py-line">                        <tt class="py-comment"># remove from list</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-name">list</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt>  <tt class="py-line">                         </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt>  <tt class="py-line">                        <tt class="py-comment"># remove from view</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-comment">#actor = geom.GetActor()</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt id="link-11" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-11', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"GeomRemoved"</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt>  <tt class="py-line">                         </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt>  <tt class="py-line">                <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt>  <tt class="py-line">                        <tt class="py-comment">###print 'removegeom error'  </tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-comment"># catched silly 'not in list' exceptions</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-keyword">pass</tt> </tt>
</div><a name="L92"></a><tt class="py-lineno"> 92</tt>  <tt class="py-line">                         </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.__changeColor"></a><div id="HeaDSETModel.__changeColor-def"><a name="L94"></a><tt class="py-lineno"> 94</tt> <a class="py-toggle" href="#" id="HeaDSETModel.__changeColor-toggle" onclick="return toggle('HeaDSETModel.__changeColor');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#__changeColor">__changeColor</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">list</tt><tt class="py-op">,</tt> <tt class="py-param">color</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.__changeColor-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.__changeColor-expanded"><a name="L95"></a><tt class="py-lineno"> 95</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt>  <tt class="py-line"><tt class="py-docstring">                        Private method that changes the color for an entire list at once. </tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt>  <tt class="py-line"><tt class="py-docstring">                        Will once change the color of the currently active geoms in the</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt>  <tt class="py-line"><tt class="py-docstring">                        view.</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt>  <tt class="py-line"><tt class="py-docstring">                        @param list: The internal collection that will be modified. </tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt>  <tt class="py-line"><tt class="py-docstring">                        @param color: The color used for this entire collection</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt>  <tt class="py-line">                <tt class="py-comment"># color components</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt id="link-12" class="py-name" targets="Variable headset.Main.r=headset.Main-module.html#r"><a title="headset.Main.r" class="py-name" href="#" onclick="return doclink('link-12', 'r', 'link-12');">r</a></tt><tt class="py-op">,</tt> <tt class="py-name">g</tt><tt class="py-op">,</tt> <tt class="py-name">b</tt> <tt class="py-op">=</tt> <tt class="py-name">color</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt>  <tt class="py-line">                 </tt>
<a name="L106"></a><tt class="py-lineno">106</tt>  <tt class="py-line">                <tt class="py-comment"># change color for all geoms in list</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-keyword">for</tt> <tt class="py-name">i</tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">list</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt>  <tt class="py-line">                        <tt class="py-name">list</tt><tt class="py-op">[</tt><tt class="py-name">i</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetColor()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetColor"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetColor" class="py-name" href="#" onclick="return doclink('link-13', 'SetColor', 'link-13');">SetColor</a></tt><tt class="py-op">(</tt><tt id="link-14" class="py-name"><a title="headset.Main.r" class="py-name" href="#" onclick="return doclink('link-14', 'r', 'link-12');">r</a></tt><tt class="py-op">,</tt> <tt class="py-name">g</tt><tt class="py-op">,</tt> <tt class="py-name">b</tt><tt class="py-op">)</tt> </tt>
</div><a name="L109"></a><tt class="py-lineno">109</tt>  <tt class="py-line"> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt>  <tt class="py-line"> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.__changeVisible"></a><div id="HeaDSETModel.__changeVisible-def"><a name="L112"></a><tt class="py-lineno">112</tt> <a class="py-toggle" href="#" id="HeaDSETModel.__changeVisible-toggle" onclick="return toggle('HeaDSETModel.__changeVisible');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#__changeVisible">__changeVisible</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">list</tt><tt class="py-op">,</tt> <tt class="py-param">visible</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.__changeVisible-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.__changeVisible-expanded"><a name="L113"></a><tt class="py-lineno">113</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt>  <tt class="py-line"><tt class="py-docstring">                        Private method that changes the visibility of the entire list at </tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt>  <tt class="py-line"><tt class="py-docstring">                        once to the user provided visiblity status.</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt>  <tt class="py-line"><tt class="py-docstring">                        @param list: The internal collection that will be modified. </tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt>  <tt class="py-line"><tt class="py-docstring">                        @param visible: The color used for this entire collection</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt>  <tt class="py-line">                <tt class="py-comment"># change visibility for all geoms in list</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-keyword">for</tt> <tt class="py-name">i</tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">list</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt>  <tt class="py-line">                        <tt class="py-name">list</tt><tt class="py-op">[</tt><tt class="py-name">i</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetVisibility()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetVisibility"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetVisibility" class="py-name" href="#" onclick="return doclink('link-15', 'SetVisibility', 'link-15');">SetVisibility</a></tt><tt class="py-op">(</tt><tt class="py-name">visible</tt><tt class="py-op">)</tt>           </tt>
</div><a name="L123"></a><tt class="py-lineno">123</tt>  <tt class="py-line">         </tt>
<a name="L124"></a><tt class="py-lineno">124</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.ModelMode"></a><div id="HeaDSETModel.ModelMode-def"><a name="L125"></a><tt class="py-lineno">125</tt> <a class="py-toggle" href="#" id="HeaDSETModel.ModelMode-toggle" onclick="return toggle('HeaDSETModel.ModelMode');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#ModelMode">ModelMode</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.ModelMode-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.ModelMode-expanded"><a name="L126"></a><tt class="py-lineno">126</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt>  <tt class="py-line"><tt class="py-docstring">                        Set the system in ModelMode. This means that the system allows </tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt>  <tt class="py-line"><tt class="py-docstring">                        changes to tumor and safe path geoms by the view.</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__mode</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
</div><a name="L131"></a><tt class="py-lineno">131</tt>  <tt class="py-line">         </tt>
<a name="L132"></a><tt class="py-lineno">132</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.IsModelMode"></a><div id="HeaDSETModel.IsModelMode-def"><a name="L133"></a><tt class="py-lineno">133</tt> <a class="py-toggle" href="#" id="HeaDSETModel.IsModelMode-toggle" onclick="return toggle('HeaDSETModel.IsModelMode');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#IsModelMode">IsModelMode</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.IsModelMode-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.IsModelMode-expanded"><a name="L134"></a><tt class="py-lineno">134</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt>  <tt class="py-line"><tt class="py-docstring">                        Tells if the system is in ModelMode. </tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: True if the moel is in ModelMode. False if the system is not</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt>  <tt class="py-line"><tt class="py-docstring">                                in ModelMode.</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__mode</tt> </tt>
</div><a name="L141"></a><tt class="py-lineno">141</tt>  <tt class="py-line">         </tt>
<a name="L142"></a><tt class="py-lineno">142</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.NonModelMode"></a><div id="HeaDSETModel.NonModelMode-def"><a name="L143"></a><tt class="py-lineno">143</tt> <a class="py-toggle" href="#" id="HeaDSETModel.NonModelMode-toggle" onclick="return toggle('HeaDSETModel.NonModelMode');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#NonModelMode">NonModelMode</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.NonModelMode-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.NonModelMode-expanded"><a name="L144"></a><tt class="py-lineno">144</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt>  <tt class="py-line"><tt class="py-docstring">                        Set the system in ModelMode. This means that the system does not </tt> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt>  <tt class="py-line"><tt class="py-docstring">                        allow changes to tumor and safe path geoms by the view.</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt>      </tt>
<a name="L148"></a><tt class="py-lineno">148</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__mode</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
</div><a name="L149"></a><tt class="py-lineno">149</tt>  <tt class="py-line">         </tt>
<a name="L150"></a><tt class="py-lineno">150</tt>  <tt class="py-line">                         </tt>
<a name="HeaDSETModel.IsNonModelMode"></a><div id="HeaDSETModel.IsNonModelMode-def"><a name="L151"></a><tt class="py-lineno">151</tt> <a class="py-toggle" href="#" id="HeaDSETModel.IsNonModelMode-toggle" onclick="return toggle('HeaDSETModel.IsNonModelMode');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#IsNonModelMode">IsNonModelMode</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.IsNonModelMode-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.IsNonModelMode-expanded"><a name="L152"></a><tt class="py-lineno">152</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt>  <tt class="py-line"><tt class="py-docstring">                        Tells if the system is in NonModelMode</tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: True if the moel is in NonModelMode. False if the system is </tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt>  <tt class="py-line"><tt class="py-docstring">                                not in NonModelMode.</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__mode</tt> </tt>
</div><a name="L159"></a><tt class="py-lineno">159</tt>  <tt class="py-line"> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt>  <tt class="py-line">         </tt>
<a name="L161"></a><tt class="py-lineno">161</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.SetDicomModel"></a><div id="HeaDSETModel.SetDicomModel-def"><a name="L162"></a><tt class="py-lineno">162</tt> <a class="py-toggle" href="#" id="HeaDSETModel.SetDicomModel-toggle" onclick="return toggle('HeaDSETModel.SetDicomModel');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#SetDicomModel">SetDicomModel</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.SetDicomModel-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.SetDicomModel-expanded"><a name="L163"></a><tt class="py-lineno">163</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt>  <tt class="py-line"><tt class="py-docstring">                        Set the Dicom for the current session.</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom which will be considered a Dicom model.</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt>  <tt class="py-line">                 </tt>
<a name="L169"></a><tt class="py-lineno">169</tt>  <tt class="py-line">                <tt class="py-comment"># add geom to list and view</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> <tt class="py-op">=</tt> <tt class="py-name">geom</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt>  <tt class="py-line">                        <tt id="link-16" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-16', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"DicomAdded"</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt><tt class="py-op">)</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt>  <tt class="py-line">                <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt>  <tt class="py-line">                        <tt class="py-comment"># RSLV: do nothing? or override with new dicom model?</tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-keyword">pass</tt> </tt>
</div><a name="L176"></a><tt class="py-lineno">176</tt>  <tt class="py-line">         </tt>
<a name="L177"></a><tt class="py-lineno">177</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.GetDicomModel"></a><div id="HeaDSETModel.GetDicomModel-def"><a name="L178"></a><tt class="py-lineno">178</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetDicomModel-toggle" onclick="return toggle('HeaDSETModel.GetDicomModel');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetDicomModel">GetDicomModel</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetDicomModel-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetDicomModel-expanded"><a name="L179"></a><tt class="py-lineno">179</tt>  <tt class="py-line">                 </tt>
<a name="L180"></a><tt class="py-lineno">180</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> </tt>
</div><a name="L181"></a><tt class="py-lineno">181</tt>  <tt class="py-line">         </tt>
<a name="L182"></a><tt class="py-lineno">182</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.UnsetDicomModel"></a><div id="HeaDSETModel.UnsetDicomModel-def"><a name="L183"></a><tt class="py-lineno">183</tt> <a class="py-toggle" href="#" id="HeaDSETModel.UnsetDicomModel-toggle" onclick="return toggle('HeaDSETModel.UnsetDicomModel');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#UnsetDicomModel">UnsetDicomModel</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.UnsetDicomModel-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.UnsetDicomModel-expanded"><a name="L184"></a><tt class="py-lineno">184</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt>  <tt class="py-line"><tt class="py-docstring">                        Removes the Dicom model.</tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt>  <tt class="py-line">                <tt class="py-comment"># remove from list and view</tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt>  <tt class="py-line">                        <tt id="link-17" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-17', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"DicomRemoved"</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt><tt class="py-op">)</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
</div><a name="L191"></a><tt class="py-lineno">191</tt>  <tt class="py-line">                 </tt>
<a name="L192"></a><tt class="py-lineno">192</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.AddToPath"></a><div id="HeaDSETModel.AddToPath-def"><a name="L193"></a><tt class="py-lineno">193</tt> <a class="py-toggle" href="#" id="HeaDSETModel.AddToPath-toggle" onclick="return toggle('HeaDSETModel.AddToPath');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#AddToPath">AddToPath</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.AddToPath-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.AddToPath-expanded"><a name="L194"></a><tt class="py-lineno">194</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt>  <tt class="py-line"><tt class="py-docstring">                        Adds a geom to the path list.</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be added to the path.</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt>  <tt class="py-line">                <tt class="py-comment"># set color of path geom</tt> </tt>
<a name="L200"></a><tt class="py-lineno">200</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt id="link-18" class="py-name"><a title="headset.Main.r" class="py-name" href="#" onclick="return doclink('link-18', 'r', 'link-12');">r</a></tt><tt class="py-op">,</tt> <tt class="py-name">g</tt><tt class="py-op">,</tt> <tt class="py-name">b</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__pathColor</tt> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt>  <tt class="py-line">                <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetColor" class="py-name" href="#" onclick="return doclink('link-19', 'SetColor', 'link-13');">SetColor</a></tt><tt class="py-op">(</tt><tt id="link-20" class="py-name"><a title="headset.Main.r" class="py-name" href="#" onclick="return doclink('link-20', 'r', 'link-12');">r</a></tt><tt class="py-op">,</tt> <tt class="py-name">g</tt><tt class="py-op">,</tt> <tt class="py-name">b</tt><tt class="py-op">)</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt>  <tt class="py-line">                 </tt>
<a name="L203"></a><tt class="py-lineno">203</tt>  <tt class="py-line">                <tt class="py-comment"># add geom to list and view</tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Method headset.model.Model.HeaDSETModel.__addGeom()=headset.model.Model.HeaDSETModel-class.html#__addGeom"><a title="headset.model.Model.HeaDSETModel.__addGeom" class="py-name" href="#" onclick="return doclink('link-21', '__addGeom', 'link-21');">__addGeom</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
</div><a name="L205"></a><tt class="py-lineno">205</tt>  <tt class="py-line">         </tt>
<a name="L206"></a><tt class="py-lineno">206</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.RemoveFromPath"></a><div id="HeaDSETModel.RemoveFromPath-def"><a name="L207"></a><tt class="py-lineno">207</tt> <a class="py-toggle" href="#" id="HeaDSETModel.RemoveFromPath-toggle" onclick="return toggle('HeaDSETModel.RemoveFromPath');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#RemoveFromPath">RemoveFromPath</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.RemoveFromPath-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.RemoveFromPath-expanded"><a name="L208"></a><tt class="py-lineno">208</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt>  <tt class="py-line"><tt class="py-docstring">                        Removes a geom from the path list.</tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be removed from the path list.</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt>  <tt class="py-line">                <tt class="py-comment"># remove geom from list and view</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Method headset.model.Model.HeaDSETModel.__removeGeom()=headset.model.Model.HeaDSETModel-class.html#__removeGeom"><a title="headset.model.Model.HeaDSETModel.__removeGeom" class="py-name" href="#" onclick="return doclink('link-22', '__removeGeom', 'link-22');">__removeGeom</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
</div><a name="L215"></a><tt class="py-lineno">215</tt>  <tt class="py-line">                 </tt>
<a name="L216"></a><tt class="py-lineno">216</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.AddToTumor"></a><div id="HeaDSETModel.AddToTumor-def"><a name="L217"></a><tt class="py-lineno">217</tt> <a class="py-toggle" href="#" id="HeaDSETModel.AddToTumor-toggle" onclick="return toggle('HeaDSETModel.AddToTumor');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#AddToTumor">AddToTumor</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.AddToTumor-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.AddToTumor-expanded"><a name="L218"></a><tt class="py-lineno">218</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt>  <tt class="py-line"><tt class="py-docstring">                        Adds a geom to the tumor list.</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be added to the tumor list.</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt>  <tt class="py-line">                <tt class="py-comment">#  set color of tumor geom</tt> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt id="link-23" class="py-name"><a title="headset.Main.r" class="py-name" href="#" onclick="return doclink('link-23', 'r', 'link-12');">r</a></tt><tt class="py-op">,</tt> <tt class="py-name">g</tt><tt class="py-op">,</tt> <tt class="py-name">b</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumorColor</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt>  <tt class="py-line">                <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetColor" class="py-name" href="#" onclick="return doclink('link-24', 'SetColor', 'link-13');">SetColor</a></tt><tt class="py-op">(</tt><tt id="link-25" class="py-name"><a title="headset.Main.r" class="py-name" href="#" onclick="return doclink('link-25', 'r', 'link-12');">r</a></tt><tt class="py-op">,</tt> <tt class="py-name">g</tt><tt class="py-op">,</tt> <tt class="py-name">b</tt><tt class="py-op">)</tt>           </tt>
<a name="L226"></a><tt class="py-lineno">226</tt>  <tt class="py-line">                 </tt>
<a name="L227"></a><tt class="py-lineno">227</tt>  <tt class="py-line">                <tt class="py-comment"># add geom to list and view</tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="headset.model.Model.HeaDSETModel.__addGeom" class="py-name" href="#" onclick="return doclink('link-26', '__addGeom', 'link-21');">__addGeom</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
</div><a name="L229"></a><tt class="py-lineno">229</tt>  <tt class="py-line">                <tt class="py-comment">##print self.__tumor_geoms</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt>  <tt class="py-line"><tt class="py-comment"></tt>         </tt>
<a name="L231"></a><tt class="py-lineno">231</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.RemoveFromTumor"></a><div id="HeaDSETModel.RemoveFromTumor-def"><a name="L232"></a><tt class="py-lineno">232</tt> <a class="py-toggle" href="#" id="HeaDSETModel.RemoveFromTumor-toggle" onclick="return toggle('HeaDSETModel.RemoveFromTumor');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#RemoveFromTumor">RemoveFromTumor</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.RemoveFromTumor-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.RemoveFromTumor-expanded"><a name="L233"></a><tt class="py-lineno">233</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt>  <tt class="py-line"><tt class="py-docstring">                        Removes a geom from the tumor list.</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be removed from the the tumor list.</tt> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt>  <tt class="py-line">                <tt class="py-comment"># remove geom from list and view</tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="headset.model.Model.HeaDSETModel.__removeGeom" class="py-name" href="#" onclick="return doclink('link-27', '__removeGeom', 'link-22');">__removeGeom</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
</div><a name="L240"></a><tt class="py-lineno">240</tt>  <tt class="py-line">                 </tt>
<a name="L241"></a><tt class="py-lineno">241</tt>  <tt class="py-line">         </tt>
<a name="L242"></a><tt class="py-lineno">242</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.GetMutables"></a><div id="HeaDSETModel.GetMutables-def"><a name="L243"></a><tt class="py-lineno">243</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetMutables-toggle" onclick="return toggle('HeaDSETModel.GetMutables');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetMutables">GetMutables</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetMutables-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetMutables-expanded"><a name="L244"></a><tt class="py-lineno">244</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt>  <tt class="py-line"><tt class="py-docstring">                        Returns a list of geoms that the view is allowed to manipulate.</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: List of mutable geoms</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt>  <tt class="py-line">                <tt class="py-comment"># create list of mutable geoms</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt>  <tt class="py-line"><tt class="py-comment"></tt>                 </tt>
<a name="L251"></a><tt class="py-lineno">251</tt>  <tt class="py-line">                <tt class="py-name">mutables</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__mode</tt><tt class="py-op">:</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt>  <tt class="py-line">                        <tt class="py-name">mutables</tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">)</tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt>  <tt class="py-line">                        <tt class="py-name">mutables</tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">)</tt> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt>  <tt class="py-line">                 </tt>
<a name="L256"></a><tt class="py-lineno">256</tt>  <tt class="py-line">                <tt class="py-comment"># return list of mutable geoms</tt> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-keyword">return</tt> <tt class="py-name">mutables</tt> </tt>
</div><a name="L258"></a><tt class="py-lineno">258</tt>  <tt class="py-line">         </tt>
<a name="L259"></a><tt class="py-lineno">259</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.GetInstrument"></a><div id="HeaDSETModel.GetInstrument-def"><a name="L260"></a><tt class="py-lineno">260</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetInstrument-toggle" onclick="return toggle('HeaDSETModel.GetInstrument');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetInstrument">GetInstrument</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetInstrument-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetInstrument-expanded"><a name="L261"></a><tt class="py-lineno">261</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L262"></a><tt class="py-lineno">262</tt>  <tt class="py-line"><tt class="py-docstring">                        Gives back the instrument geom.</tt> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: The geom that is designated the instrument</tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt>  <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt> </tt>
</div><a name="L267"></a><tt class="py-lineno">267</tt>  <tt class="py-line">         </tt>
<a name="L268"></a><tt class="py-lineno">268</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.GetTumorGeom"></a><div id="HeaDSETModel.GetTumorGeom-def"><a name="L269"></a><tt class="py-lineno">269</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetTumorGeom-toggle" onclick="return toggle('HeaDSETModel.GetTumorGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetTumorGeom">GetTumorGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">index</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetTumorGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetTumorGeom-expanded"><a name="L270"></a><tt class="py-lineno">270</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt>  <tt class="py-line"><tt class="py-docstring">                        Gives back a tumor geom by index.</tt> </tt>
<a name="L272"></a><tt class="py-lineno">272</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L273"></a><tt class="py-lineno">273</tt>  <tt class="py-line"><tt class="py-docstring">                        @param index: The index of the geom in the list.</tt> </tt>
<a name="L274"></a><tt class="py-lineno">274</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: The requested geom</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">[</tt><tt class="py-name">index</tt><tt class="py-op">]</tt> </tt>
</div><a name="L277"></a><tt class="py-lineno">277</tt>  <tt class="py-line">                 </tt>
<a name="L278"></a><tt class="py-lineno">278</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.GetPathGeom"></a><div id="HeaDSETModel.GetPathGeom-def"><a name="L279"></a><tt class="py-lineno">279</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetPathGeom-toggle" onclick="return toggle('HeaDSETModel.GetPathGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetPathGeom">GetPathGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">index</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetPathGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetPathGeom-expanded"><a name="L280"></a><tt class="py-lineno">280</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt>  <tt class="py-line"><tt class="py-docstring">                        Gives back a path geom by index.</tt> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt>  <tt class="py-line"><tt class="py-docstring">                        @param index: The index of the geom in the list.</tt> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: The requested geom.</tt> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">[</tt><tt class="py-name">index</tt><tt class="py-op">]</tt> </tt>
</div><a name="L287"></a><tt class="py-lineno">287</tt>  <tt class="py-line">                 </tt>
<a name="L288"></a><tt class="py-lineno">288</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.GetNumberOfTumorGeoms"></a><div id="HeaDSETModel.GetNumberOfTumorGeoms-def"><a name="L289"></a><tt class="py-lineno">289</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetNumberOfTumorGeoms-toggle" onclick="return toggle('HeaDSETModel.GetNumberOfTumorGeoms');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetNumberOfTumorGeoms">GetNumberOfTumorGeoms</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetNumberOfTumorGeoms-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetNumberOfTumorGeoms-expanded"><a name="L290"></a><tt class="py-lineno">290</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L291"></a><tt class="py-lineno">291</tt>  <tt class="py-line"><tt class="py-docstring">                        Returns the number of geoms that are in the Tumor list.</tt> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: The number of tumor geoms. </tt> </tt>
<a name="L294"></a><tt class="py-lineno">294</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L295"></a><tt class="py-lineno">295</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">)</tt> </tt>
</div><a name="L296"></a><tt class="py-lineno">296</tt>  <tt class="py-line">                 </tt>
<a name="L297"></a><tt class="py-lineno">297</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.GetNumberOfPathGeoms"></a><div id="HeaDSETModel.GetNumberOfPathGeoms-def"><a name="L298"></a><tt class="py-lineno">298</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetNumberOfPathGeoms-toggle" onclick="return toggle('HeaDSETModel.GetNumberOfPathGeoms');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetNumberOfPathGeoms">GetNumberOfPathGeoms</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetNumberOfPathGeoms-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetNumberOfPathGeoms-expanded"><a name="L299"></a><tt class="py-lineno">299</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt>  <tt class="py-line"><tt class="py-docstring">                        Returns the number of geoms that are in the Path list.</tt> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L302"></a><tt class="py-lineno">302</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: The number of path geoms. </tt> </tt>
<a name="L303"></a><tt class="py-lineno">303</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L304"></a><tt class="py-lineno">304</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">)</tt> </tt>
</div><a name="L305"></a><tt class="py-lineno">305</tt>  <tt class="py-line">         </tt>
<a name="L306"></a><tt class="py-lineno">306</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.GetGeomByID"></a><div id="HeaDSETModel.GetGeomByID-def"><a name="L307"></a><tt class="py-lineno">307</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetGeomByID-toggle" onclick="return toggle('HeaDSETModel.GetGeomByID');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetGeomByID">GetGeomByID</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">ID</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetGeomByID-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetGeomByID-expanded"><a name="L308"></a><tt class="py-lineno">308</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt>  <tt class="py-line"><tt class="py-docstring">                        Gives back the geom by it's ID.</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt>  <tt class="py-line"><tt class="py-docstring">                        @param ID: The ID of the geom</tt> </tt>
<a name="L312"></a><tt class="py-lineno">312</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: The geom with the ID if in the system, if the geom is not</tt> </tt>
<a name="L313"></a><tt class="py-lineno">313</tt>  <tt class="py-line"><tt class="py-docstring">                                the system it will return None</tt> </tt>
<a name="L314"></a><tt class="py-lineno">314</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt>  <tt class="py-line">                 </tt>
<a name="L316"></a><tt class="py-lineno">316</tt>  <tt class="py-line">                <tt class="py-name">geoms</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt>  <tt class="py-line">                <tt class="py-name">geoms</tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">)</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt>  <tt class="py-line">                <tt class="py-name">geoms</tt><tt class="py-op">.</tt><tt class="py-name">extend</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">)</tt> </tt>
<a name="L319"></a><tt class="py-lineno">319</tt>  <tt class="py-line">                <tt class="py-comment">#geoms.extend(self.__dicom_model)</tt> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt>  <tt class="py-line">                        <tt class="py-name">geoms</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt><tt class="py-op">)</tt> </tt>
<a name="L322"></a><tt class="py-lineno">322</tt>  <tt class="py-line">                 </tt>
<a name="L323"></a><tt class="py-lineno">323</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L324"></a><tt class="py-lineno">324</tt>  <tt class="py-line">                        <tt class="py-name">geoms</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">)</tt> </tt>
<a name="L325"></a><tt class="py-lineno">325</tt>  <tt class="py-line"> </tt>
<a name="L326"></a><tt class="py-lineno">326</tt>  <tt class="py-line">                <tt class="py-name">result</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L327"></a><tt class="py-lineno">327</tt>  <tt class="py-line">                <tt class="py-name">found</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
<a name="L328"></a><tt class="py-lineno">328</tt>  <tt class="py-line">                <tt class="py-name">i</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
<a name="L329"></a><tt class="py-lineno">329</tt>  <tt class="py-line">                <tt class="py-keyword">while</tt> <tt class="py-keyword">not</tt> <tt class="py-name">found</tt> <tt class="py-keyword">and</tt> <tt class="py-name">i</tt> <tt class="py-op">&lt;</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">geoms</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt>  <tt class="py-line">                        <tt class="py-keyword">if</tt> <tt class="py-name">geoms</tt><tt class="py-op">[</tt><tt class="py-name">i</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.GetID()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#GetID"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.GetID" class="py-name" href="#" onclick="return doclink('link-28', 'GetID', 'link-28');">GetID</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">ID</tt><tt class="py-op">:</tt> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt>  <tt class="py-line">                                <tt class="py-name">result</tt> <tt class="py-op">=</tt> <tt class="py-name">geoms</tt><tt class="py-op">[</tt><tt class="py-name">i</tt><tt class="py-op">]</tt> </tt>
<a name="L332"></a><tt class="py-lineno">332</tt>  <tt class="py-line">                                <tt class="py-name">found</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt>  </tt>
<a name="L333"></a><tt class="py-lineno">333</tt>  <tt class="py-line">                        <tt class="py-name">i</tt> <tt class="py-op">=</tt> <tt class="py-name">i</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">result</tt> </tt>
</div><a name="L335"></a><tt class="py-lineno">335</tt>  <tt class="py-line">         </tt>
<a name="L336"></a><tt class="py-lineno">336</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.RemoveGeom"></a><div id="HeaDSETModel.RemoveGeom-def"><a name="L337"></a><tt class="py-lineno">337</tt> <a class="py-toggle" href="#" id="HeaDSETModel.RemoveGeom-toggle" onclick="return toggle('HeaDSETModel.RemoveGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#RemoveGeom">RemoveGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.RemoveGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.RemoveGeom-expanded"><a name="L338"></a><tt class="py-lineno">338</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L339"></a><tt class="py-lineno">339</tt>  <tt class="py-line"><tt class="py-docstring">                        Removes a mutable geom.</tt> </tt>
<a name="L340"></a><tt class="py-lineno">340</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L341"></a><tt class="py-lineno">341</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be removed.</tt> </tt>
<a name="L342"></a><tt class="py-lineno">342</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method headset.model.Model.HeaDSETModel.RemoveFromTumor()=headset.model.Model.HeaDSETModel-class.html#RemoveFromTumor"><a title="headset.model.Model.HeaDSETModel.RemoveFromTumor" class="py-name" href="#" onclick="return doclink('link-29', 'RemoveFromTumor', 'link-29');">RemoveFromTumor</a></tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L344"></a><tt class="py-lineno">344</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name" targets="Method headset.model.Model.HeaDSETModel.RemoveFromPath()=headset.model.Model.HeaDSETModel-class.html#RemoveFromPath"><a title="headset.model.Model.HeaDSETModel.RemoveFromPath" class="py-name" href="#" onclick="return doclink('link-30', 'RemoveFromPath', 'link-30');">RemoveFromPath</a></tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
</div><a name="L345"></a><tt class="py-lineno">345</tt>  <tt class="py-line"> </tt>
<a name="L346"></a><tt class="py-lineno">346</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.Clone"></a><div id="HeaDSETModel.Clone-def"><a name="L347"></a><tt class="py-lineno">347</tt> <a class="py-toggle" href="#" id="HeaDSETModel.Clone-toggle" onclick="return toggle('HeaDSETModel.Clone');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#Clone">Clone</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.Clone-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.Clone-expanded"><a name="L348"></a><tt class="py-lineno">348</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L349"></a><tt class="py-lineno">349</tt>  <tt class="py-line"><tt class="py-docstring">                        Clones a geom</tt> </tt>
<a name="L350"></a><tt class="py-lineno">350</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L351"></a><tt class="py-lineno">351</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be cloned</tt> </tt>
<a name="L352"></a><tt class="py-lineno">352</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L353"></a><tt class="py-lineno">353</tt>  <tt class="py-line">                <tt class="py-comment">#find group</tt> </tt>
<a name="L354"></a><tt class="py-lineno">354</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">tumor</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name" targets="Method headset.model.Model.HeaDSETModel.IsTumorGeom()=headset.model.Model.HeaDSETModel-class.html#IsTumorGeom"><a title="headset.model.Model.HeaDSETModel.IsTumorGeom" class="py-name" href="#" onclick="return doclink('link-31', 'IsTumorGeom', 'link-31');">IsTumorGeom</a></tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L355"></a><tt class="py-lineno">355</tt>  <tt class="py-line">                <tt class="py-name">path</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name" targets="Method headset.model.Model.HeaDSETModel.IsPathGeom()=headset.model.Model.HeaDSETModel-class.html#IsPathGeom"><a title="headset.model.Model.HeaDSETModel.IsPathGeom" class="py-name" href="#" onclick="return doclink('link-32', 'IsPathGeom', 'link-32');">IsPathGeom</a></tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt>     </tt>
<a name="L356"></a><tt class="py-lineno">356</tt>  <tt class="py-line">                <tt class="py-comment">#deep copy geom</tt> </tt>
<a name="L357"></a><tt class="py-lineno">357</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">copy</tt> <tt class="py-op">=</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.Clone()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#Clone,Method headset.model.Model.HeaDSETModel.Clone()=headset.model.Model.HeaDSETModel-class.html#Clone"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.Clone
headset.model.Model.HeaDSETModel.Clone" class="py-name" href="#" onclick="return doclink('link-33', 'Clone', 'link-33');">Clone</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L358"></a><tt class="py-lineno">358</tt>  <tt class="py-line">                <tt class="py-comment">#add to group</tt> </tt>
<a name="L359"></a><tt class="py-lineno">359</tt>  <tt class="py-line"><tt class="py-comment"></tt>                 </tt>
<a name="L360"></a><tt class="py-lineno">360</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">tumor</tt><tt class="py-op">:</tt> </tt>
<a name="L361"></a><tt class="py-lineno">361</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Method headset.model.Model.HeaDSETModel.AddToTumor()=headset.model.Model.HeaDSETModel-class.html#AddToTumor"><a title="headset.model.Model.HeaDSETModel.AddToTumor" class="py-name" href="#" onclick="return doclink('link-34', 'AddToTumor', 'link-34');">AddToTumor</a></tt><tt class="py-op">(</tt><tt class="py-name">copy</tt><tt class="py-op">)</tt> </tt>
<a name="L362"></a><tt class="py-lineno">362</tt>  <tt class="py-line">                <tt class="py-keyword">elif</tt> <tt class="py-name">path</tt><tt class="py-op">:</tt> </tt>
<a name="L363"></a><tt class="py-lineno">363</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name" targets="Method headset.model.Model.HeaDSETModel.AddToPath()=headset.model.Model.HeaDSETModel-class.html#AddToPath"><a title="headset.model.Model.HeaDSETModel.AddToPath" class="py-name" href="#" onclick="return doclink('link-35', 'AddToPath', 'link-35');">AddToPath</a></tt><tt class="py-op">(</tt><tt class="py-name">copy</tt><tt class="py-op">)</tt> </tt>
<a name="L364"></a><tt class="py-lineno">364</tt>  <tt class="py-line">                 </tt>
<a name="L365"></a><tt class="py-lineno">365</tt>  <tt class="py-line">                <tt class="py-comment"># set properties of cloned object</tt> </tt>
<a name="L366"></a><tt class="py-lineno">366</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">xpos</tt><tt class="py-op">,</tt> <tt class="py-name">ypos</tt><tt class="py-op">,</tt> <tt class="py-name">zpos</tt> <tt class="py-op">=</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.GetPosition()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#GetPosition,Method headset.peripherals.PlaybackController.PlayBackController.GetPosition()=headset.peripherals.PlaybackController.PlayBackController-class.html#GetPosition"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.GetPosition
headset.peripherals.PlaybackController.PlayBackController.GetPosition" class="py-name" href="#" onclick="return doclink('link-36', 'GetPosition', 'link-36');">GetPosition</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L367"></a><tt class="py-lineno">367</tt>  <tt class="py-line">                <tt class="py-name">copy</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetPosition()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetPosition,Method headset.peripherals.PlaybackController.PlayBackController.SetPosition()=headset.peripherals.PlaybackController.PlayBackController-class.html#SetPosition"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetPosition
headset.peripherals.PlaybackController.PlayBackController.SetPosition" class="py-name" href="#" onclick="return doclink('link-37', 'SetPosition', 'link-37');">SetPosition</a></tt><tt class="py-op">(</tt><tt class="py-name">xpos</tt><tt class="py-op">,</tt> <tt class="py-name">ypos</tt><tt class="py-op">,</tt> <tt class="py-name">zpos</tt><tt class="py-op">)</tt> </tt>
<a name="L368"></a><tt class="py-lineno">368</tt>  <tt class="py-line">                 </tt>
<a name="L369"></a><tt class="py-lineno">369</tt>  <tt class="py-line">                <tt class="py-name">xrot</tt><tt class="py-op">,</tt> <tt class="py-name">yrot</tt><tt class="py-op">,</tt> <tt class="py-name">zrot</tt> <tt class="py-op">=</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.GetOrientation()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#GetOrientation"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.GetOrientation" class="py-name" href="#" onclick="return doclink('link-38', 'GetOrientation', 'link-38');">GetOrientation</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L370"></a><tt class="py-lineno">370</tt>  <tt class="py-line">                <tt class="py-name">copy</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetOrientation()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetOrientation"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetOrientation" class="py-name" href="#" onclick="return doclink('link-39', 'SetOrientation', 'link-39');">SetOrientation</a></tt><tt class="py-op">(</tt><tt class="py-name">xrot</tt><tt class="py-op">,</tt> <tt class="py-name">yrot</tt><tt class="py-op">,</tt> <tt class="py-name">zrot</tt><tt class="py-op">)</tt> </tt>
<a name="L371"></a><tt class="py-lineno">371</tt>  <tt class="py-line">                 </tt>
<a name="L372"></a><tt class="py-lineno">372</tt>  <tt class="py-line">                <tt class="py-name">xscale</tt><tt class="py-op">,</tt> <tt class="py-name">yscale</tt><tt class="py-op">,</tt> <tt class="py-name">zscale</tt> <tt class="py-op">=</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.GetScale()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#GetScale"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.GetScale" class="py-name" href="#" onclick="return doclink('link-40', 'GetScale', 'link-40');">GetScale</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L373"></a><tt class="py-lineno">373</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"Scales:"</tt> </tt>
<a name="L374"></a><tt class="py-lineno">374</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-name">xscale</tt><tt class="py-op">,</tt> <tt class="py-name">yscale</tt><tt class="py-op">,</tt> <tt class="py-name">zscale</tt> </tt>
<a name="L375"></a><tt class="py-lineno">375</tt>  <tt class="py-line">                <tt class="py-name">copy</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetScale()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetScale"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetScale" class="py-name" href="#" onclick="return doclink('link-41', 'SetScale', 'link-41');">SetScale</a></tt><tt class="py-op">(</tt><tt class="py-name">xscale</tt><tt class="py-op">,</tt> <tt class="py-name">yscale</tt><tt class="py-op">,</tt> <tt class="py-name">zscale</tt><tt class="py-op">)</tt> </tt>
<a name="L376"></a><tt class="py-lineno">376</tt>  <tt class="py-line">                 </tt>
<a name="L377"></a><tt class="py-lineno">377</tt>  <tt class="py-line">                <tt class="py-name">visibility</tt> <tt class="py-op">=</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.GetVisibility()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#GetVisibility"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.GetVisibility" class="py-name" href="#" onclick="return doclink('link-42', 'GetVisibility', 'link-42');">GetVisibility</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L378"></a><tt class="py-lineno">378</tt>  <tt class="py-line">                <tt class="py-name">copy</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetVisibility" class="py-name" href="#" onclick="return doclink('link-43', 'SetVisibility', 'link-15');">SetVisibility</a></tt><tt class="py-op">(</tt><tt class="py-name">visibility</tt><tt class="py-op">)</tt> </tt>
</div><a name="L379"></a><tt class="py-lineno">379</tt>  <tt class="py-line">                 </tt>
<a name="L380"></a><tt class="py-lineno">380</tt>  <tt class="py-line">                <tt class="py-comment"># RSLV: opacity, color?</tt> </tt>
<a name="L381"></a><tt class="py-lineno">381</tt>  <tt class="py-line"><tt class="py-comment"></tt>                 </tt>
<a name="L382"></a><tt class="py-lineno">382</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.DisplayInstrument"></a><div id="HeaDSETModel.DisplayInstrument-def"><a name="L383"></a><tt class="py-lineno">383</tt> <a class="py-toggle" href="#" id="HeaDSETModel.DisplayInstrument-toggle" onclick="return toggle('HeaDSETModel.DisplayInstrument');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#DisplayInstrument">DisplayInstrument</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.DisplayInstrument-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.DisplayInstrument-expanded"><a name="L384"></a><tt class="py-lineno">384</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L385"></a><tt class="py-lineno">385</tt>  <tt class="py-line"><tt class="py-docstring">                        Enables the instrument if not present, if the instrument is invisble</tt> </tt>
<a name="L386"></a><tt class="py-lineno">386</tt>  <tt class="py-line"><tt class="py-docstring">                        it is made visible again</tt> </tt>
<a name="L387"></a><tt class="py-lineno">387</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L388"></a><tt class="py-lineno">388</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L389"></a><tt class="py-lineno">389</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt> <tt class="py-op">=</tt> <tt id="link-44" class="py-name"><a title="headset.model.HeaDSETCone'.HeaDSETCone" class="py-name" href="#" onclick="return doclink('link-44', 'HeaDSETCone', 'link-2');">HeaDSETCone</a></tt><tt class="py-op">(</tt><tt class="py-string">"Instrument"</tt><tt class="py-op">)</tt> </tt>
<a name="L390"></a><tt class="py-lineno">390</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetInstrument()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetInstrument"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetInstrument" class="py-name" href="#" onclick="return doclink('link-45', 'SetInstrument', 'link-45');">SetInstrument</a></tt><tt class="py-op">(</tt><tt class="py-name">True</tt><tt class="py-op">)</tt>  </tt>
<a name="L391"></a><tt class="py-lineno">391</tt>  <tt class="py-line">                        <tt class="py-comment">#Publisher.sendMessage("GeomAdded", self.__instrument)</tt> </tt>
<a name="L392"></a><tt class="py-lineno">392</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt id="link-46" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-46', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"InstrumentAdded"</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">)</tt> </tt>
<a name="L393"></a><tt class="py-lineno">393</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetOpacity()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetOpacity"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetOpacity" class="py-name" href="#" onclick="return doclink('link-47', 'SetOpacity', 'link-47');">SetOpacity</a></tt><tt class="py-op">(</tt><tt class="py-number">0.35</tt><tt class="py-op">)</tt> </tt>
<a name="L394"></a><tt class="py-lineno">394</tt>  <tt class="py-line">                        <tt class="py-name">red</tt><tt class="py-op">,</tt> <tt class="py-name">green</tt><tt class="py-op">,</tt> <tt class="py-name">blue</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrumentColor</tt> </tt>
<a name="L395"></a><tt class="py-lineno">395</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetColor" class="py-name" href="#" onclick="return doclink('link-48', 'SetColor', 'link-13');">SetColor</a></tt><tt class="py-op">(</tt><tt class="py-name">red</tt><tt class="py-op">,</tt> <tt class="py-name">green</tt><tt class="py-op">,</tt> <tt class="py-name">blue</tt><tt class="py-op">)</tt>                     </tt>
<a name="L396"></a><tt class="py-lineno">396</tt>  <tt class="py-line">                <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L397"></a><tt class="py-lineno">397</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetVisibile()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetVisibile"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetVisibile" class="py-name" href="#" onclick="return doclink('link-49', 'SetVisibile', 'link-49');">SetVisibile</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
</div><a name="L398"></a><tt class="py-lineno">398</tt>  <tt class="py-line">                                                 </tt>
<a name="L399"></a><tt class="py-lineno">399</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.SetPathColor"></a><div id="HeaDSETModel.SetPathColor-def"><a name="L400"></a><tt class="py-lineno">400</tt> <a class="py-toggle" href="#" id="HeaDSETModel.SetPathColor-toggle" onclick="return toggle('HeaDSETModel.SetPathColor');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#SetPathColor">SetPathColor</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">red</tt><tt class="py-op">,</tt> <tt class="py-param">green</tt><tt class="py-op">,</tt> <tt class="py-param">blue</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.SetPathColor-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.SetPathColor-expanded"><a name="L401"></a><tt class="py-lineno">401</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L402"></a><tt class="py-lineno">402</tt>  <tt class="py-line"><tt class="py-docstring">                        Changes the default path color</tt> </tt>
<a name="L403"></a><tt class="py-lineno">403</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L404"></a><tt class="py-lineno">404</tt>  <tt class="py-line"><tt class="py-docstring">                        @param red: The new default red component</tt> </tt>
<a name="L405"></a><tt class="py-lineno">405</tt>  <tt class="py-line"><tt class="py-docstring">                        @param green: The new default green component</tt> </tt>
<a name="L406"></a><tt class="py-lineno">406</tt>  <tt class="py-line"><tt class="py-docstring">                        @param blue: The new default blue component</tt> </tt>
<a name="L407"></a><tt class="py-lineno">407</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L408"></a><tt class="py-lineno">408</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__pathColor</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">red</tt><tt class="py-op">,</tt> <tt class="py-name">green</tt><tt class="py-op">,</tt> <tt class="py-name">blue</tt><tt class="py-op">)</tt> </tt>
<a name="L409"></a><tt class="py-lineno">409</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Method headset.model.Model.HeaDSETModel.__changeColor()=headset.model.Model.HeaDSETModel-class.html#__changeColor"><a title="headset.model.Model.HeaDSETModel.__changeColor" class="py-name" href="#" onclick="return doclink('link-50', '__changeColor', 'link-50');">__changeColor</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__pathColor</tt><tt class="py-op">)</tt> </tt>
</div><a name="L410"></a><tt class="py-lineno">410</tt>  <tt class="py-line">                 </tt>
<a name="L411"></a><tt class="py-lineno">411</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.SetTumorColor"></a><div id="HeaDSETModel.SetTumorColor-def"><a name="L412"></a><tt class="py-lineno">412</tt> <a class="py-toggle" href="#" id="HeaDSETModel.SetTumorColor-toggle" onclick="return toggle('HeaDSETModel.SetTumorColor');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#SetTumorColor">SetTumorColor</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">red</tt><tt class="py-op">,</tt> <tt class="py-param">green</tt><tt class="py-op">,</tt> <tt class="py-param">blue</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.SetTumorColor-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.SetTumorColor-expanded"><a name="L413"></a><tt class="py-lineno">413</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L414"></a><tt class="py-lineno">414</tt>  <tt class="py-line"><tt class="py-docstring">                        Changes the default Tumor color.</tt> </tt>
<a name="L415"></a><tt class="py-lineno">415</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L416"></a><tt class="py-lineno">416</tt>  <tt class="py-line"><tt class="py-docstring">                        @param red: The new default red component</tt> </tt>
<a name="L417"></a><tt class="py-lineno">417</tt>  <tt class="py-line"><tt class="py-docstring">                        @param green: The new default green component</tt> </tt>
<a name="L418"></a><tt class="py-lineno">418</tt>  <tt class="py-line"><tt class="py-docstring">                        @param blue: The new default blue component                     </tt> </tt>
<a name="L419"></a><tt class="py-lineno">419</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L420"></a><tt class="py-lineno">420</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumorColor</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">red</tt><tt class="py-op">,</tt> <tt class="py-name">green</tt><tt class="py-op">,</tt> <tt class="py-name">blue</tt><tt class="py-op">)</tt> </tt>
<a name="L421"></a><tt class="py-lineno">421</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="headset.model.Model.HeaDSETModel.__changeColor" class="py-name" href="#" onclick="return doclink('link-51', '__changeColor', 'link-50');">__changeColor</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumorColor</tt><tt class="py-op">)</tt> </tt>
</div><a name="L422"></a><tt class="py-lineno">422</tt>  <tt class="py-line">         </tt>
<a name="L423"></a><tt class="py-lineno">423</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.SetInstrumentColor"></a><div id="HeaDSETModel.SetInstrumentColor-def"><a name="L424"></a><tt class="py-lineno">424</tt> <a class="py-toggle" href="#" id="HeaDSETModel.SetInstrumentColor-toggle" onclick="return toggle('HeaDSETModel.SetInstrumentColor');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#SetInstrumentColor">SetInstrumentColor</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">red</tt><tt class="py-op">,</tt> <tt class="py-param">green</tt><tt class="py-op">,</tt> <tt class="py-param">blue</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.SetInstrumentColor-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.SetInstrumentColor-expanded"><a name="L425"></a><tt class="py-lineno">425</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L426"></a><tt class="py-lineno">426</tt>  <tt class="py-line"><tt class="py-docstring">                        Changes the default Instrument color.</tt> </tt>
<a name="L427"></a><tt class="py-lineno">427</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L428"></a><tt class="py-lineno">428</tt>  <tt class="py-line"><tt class="py-docstring">                        @param red: The new default red component</tt> </tt>
<a name="L429"></a><tt class="py-lineno">429</tt>  <tt class="py-line"><tt class="py-docstring">                        @param green: The new default green component</tt> </tt>
<a name="L430"></a><tt class="py-lineno">430</tt>  <tt class="py-line"><tt class="py-docstring">                        @param blue: The new default blue component                     </tt> </tt>
<a name="L431"></a><tt class="py-lineno">431</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt>              </tt>
<a name="L432"></a><tt class="py-lineno">432</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetColor" class="py-name" href="#" onclick="return doclink('link-52', 'SetColor', 'link-13');">SetColor</a></tt><tt class="py-op">(</tt><tt class="py-name">red</tt><tt class="py-op">,</tt> <tt class="py-name">green</tt><tt class="py-op">,</tt> <tt class="py-name">blue</tt><tt class="py-op">)</tt> </tt>
</div><a name="L433"></a><tt class="py-lineno">433</tt>  <tt class="py-line"> </tt>
<a name="L434"></a><tt class="py-lineno">434</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.SetVisibleGroup"></a><div id="HeaDSETModel.SetVisibleGroup-def"><a name="L435"></a><tt class="py-lineno">435</tt> <a class="py-toggle" href="#" id="HeaDSETModel.SetVisibleGroup-toggle" onclick="return toggle('HeaDSETModel.SetVisibleGroup');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#SetVisibleGroup">SetVisibleGroup</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">visible</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.SetVisibleGroup-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.SetVisibleGroup-expanded"><a name="L436"></a><tt class="py-lineno">436</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L437"></a><tt class="py-lineno">437</tt>  <tt class="py-line"><tt class="py-docstring">                        Changes the visibility of an entire collection at once. This is</tt> </tt>
<a name="L438"></a><tt class="py-lineno">438</tt>  <tt class="py-line"><tt class="py-docstring">                        used mainly in the operation view. The name argument is a string</tt> </tt>
<a name="L439"></a><tt class="py-lineno">439</tt>  <tt class="py-line"><tt class="py-docstring">                        containing the name of the collection that should be changed.</tt> </tt>
<a name="L440"></a><tt class="py-lineno">440</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L441"></a><tt class="py-lineno">441</tt>  <tt class="py-line"><tt class="py-docstring">                        @param name: The name of the collection.</tt> </tt>
<a name="L442"></a><tt class="py-lineno">442</tt>  <tt class="py-line"><tt class="py-docstring">                        @param visible: The setting.</tt> </tt>
<a name="L443"></a><tt class="py-lineno">443</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L444"></a><tt class="py-lineno">444</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">name</tt> <tt class="py-op">==</tt> <tt class="py-string">"Dicom"</tt><tt class="py-op">:</tt> </tt>
<a name="L445"></a><tt class="py-lineno">445</tt>  <tt class="py-line">                        <tt class="py-comment">###print "dicom change"</tt> </tt>
<a name="L446"></a><tt class="py-lineno">446</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-comment">#self.__changeVisible(self.__dicom_model, visible)</tt> </tt>
<a name="L447"></a><tt class="py-lineno">447</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L448"></a><tt class="py-lineno">448</tt>  <tt class="py-line">                                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__dicom_model</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetVisibility" class="py-name" href="#" onclick="return doclink('link-53', 'SetVisibility', 'link-15');">SetVisibility</a></tt><tt class="py-op">(</tt><tt class="py-name">visible</tt><tt class="py-op">)</tt> <tt class="py-comment"># NOTE: also triggers GeomUpdated (etc.)!!!!</tt> </tt>
<a name="L449"></a><tt class="py-lineno">449</tt>  <tt class="py-line">                                <tt id="link-54" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-54', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"DicomUpdated"</tt><tt class="py-op">)</tt> <tt class="py-comment"># make change in visibility visibile :D</tt> </tt>
<a name="L450"></a><tt class="py-lineno">450</tt>  <tt class="py-line">                <tt class="py-keyword">elif</tt> <tt class="py-name">name</tt> <tt class="py-op">==</tt> <tt class="py-string">"Path"</tt><tt class="py-op">:</tt> </tt>
<a name="L451"></a><tt class="py-lineno">451</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Method headset.model.Model.HeaDSETModel.__changeVisible()=headset.model.Model.HeaDSETModel-class.html#__changeVisible"><a title="headset.model.Model.HeaDSETModel.__changeVisible" class="py-name" href="#" onclick="return doclink('link-55', '__changeVisible', 'link-55');">__changeVisible</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">visible</tt><tt class="py-op">)</tt> </tt>
<a name="L452"></a><tt class="py-lineno">452</tt>  <tt class="py-line">                <tt class="py-keyword">elif</tt> <tt class="py-name">name</tt> <tt class="py-op">==</tt> <tt class="py-string">"Tumor"</tt><tt class="py-op">:</tt> </tt>
<a name="L453"></a><tt class="py-lineno">453</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="headset.model.Model.HeaDSETModel.__changeVisible" class="py-name" href="#" onclick="return doclink('link-56', '__changeVisible', 'link-55');">__changeVisible</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">visible</tt><tt class="py-op">)</tt> </tt>
<a name="L454"></a><tt class="py-lineno">454</tt>  <tt class="py-line">                <tt class="py-keyword">elif</tt> <tt class="py-name">name</tt> <tt class="py-op">==</tt> <tt class="py-string">"Instrument"</tt> <tt class="py-keyword">and</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name" targets="Method headset.model.Model.HeaDSETModel.GetInstrument()=headset.model.Model.HeaDSETModel-class.html#GetInstrument"><a title="headset.model.Model.HeaDSETModel.GetInstrument" class="py-name" href="#" onclick="return doclink('link-57', 'GetInstrument', 'link-57');">GetInstrument</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L455"></a><tt class="py-lineno">455</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="headset.model.Model.HeaDSETModel.GetInstrument" class="py-name" href="#" onclick="return doclink('link-58', 'GetInstrument', 'link-57');">GetInstrument</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetVisibility" class="py-name" href="#" onclick="return doclink('link-59', 'SetVisibility', 'link-15');">SetVisibility</a></tt><tt class="py-op">(</tt><tt class="py-name">visible</tt><tt class="py-op">)</tt> </tt>
</div><a name="L456"></a><tt class="py-lineno">456</tt>  <tt class="py-line"> </tt>
<a name="L457"></a><tt class="py-lineno">457</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.IsTumorGeom"></a><div id="HeaDSETModel.IsTumorGeom-def"><a name="L458"></a><tt class="py-lineno">458</tt> <a class="py-toggle" href="#" id="HeaDSETModel.IsTumorGeom-toggle" onclick="return toggle('HeaDSETModel.IsTumorGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#IsTumorGeom">IsTumorGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.IsTumorGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.IsTumorGeom-expanded"><a name="L459"></a><tt class="py-lineno">459</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L460"></a><tt class="py-lineno">460</tt>  <tt class="py-line"><tt class="py-docstring">                        Checks if the given geom is a tumor geom.</tt> </tt>
<a name="L461"></a><tt class="py-lineno">461</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L462"></a><tt class="py-lineno">462</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be checked.</tt> </tt>
<a name="L463"></a><tt class="py-lineno">463</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: True if it's a tumor geom false if not.</tt> </tt>
<a name="L464"></a><tt class="py-lineno">464</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L465"></a><tt class="py-lineno">465</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">geom</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt> </tt>
</div><a name="L466"></a><tt class="py-lineno">466</tt>  <tt class="py-line"> </tt>
<a name="L467"></a><tt class="py-lineno">467</tt>  <tt class="py-line">                         </tt>
<a name="HeaDSETModel.IsPathGeom"></a><div id="HeaDSETModel.IsPathGeom-def"><a name="L468"></a><tt class="py-lineno">468</tt> <a class="py-toggle" href="#" id="HeaDSETModel.IsPathGeom-toggle" onclick="return toggle('HeaDSETModel.IsPathGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#IsPathGeom">IsPathGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">geom</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.IsPathGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.IsPathGeom-expanded"><a name="L469"></a><tt class="py-lineno">469</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L470"></a><tt class="py-lineno">470</tt>  <tt class="py-line"><tt class="py-docstring">                        Checks if the given geom is a path geom.</tt> </tt>
<a name="L471"></a><tt class="py-lineno">471</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L472"></a><tt class="py-lineno">472</tt>  <tt class="py-line"><tt class="py-docstring">                        @param geom: The geom that will be checked.</tt> </tt>
<a name="L473"></a><tt class="py-lineno">473</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: True if it's a path geom false if not.</tt> </tt>
<a name="L474"></a><tt class="py-lineno">474</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L475"></a><tt class="py-lineno">475</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">geom</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt> </tt>
</div><a name="L476"></a><tt class="py-lineno">476</tt>  <tt class="py-line">                 </tt>
<a name="L477"></a><tt class="py-lineno">477</tt>  <tt class="py-line"> </tt>
<a name="L478"></a><tt class="py-lineno">478</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.Save"></a><div id="HeaDSETModel.Save-def"><a name="L479"></a><tt class="py-lineno">479</tt> <a class="py-toggle" href="#" id="HeaDSETModel.Save-toggle" onclick="return toggle('HeaDSETModel.Save');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#Save">Save</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.Save-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.Save-expanded"><a name="L480"></a><tt class="py-lineno">480</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L481"></a><tt class="py-lineno">481</tt>  <tt class="py-line"><tt class="py-docstring">                        Save state to xml.</tt> </tt>
<a name="L482"></a><tt class="py-lineno">482</tt>  <tt class="py-line"><tt class="py-docstring">                        Save the al the attributes of all Geoms this model contains</tt> </tt>
<a name="L483"></a><tt class="py-lineno">483</tt>  <tt class="py-line"><tt class="py-docstring">                        to an XML file.</tt> </tt>
<a name="L484"></a><tt class="py-lineno">484</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L485"></a><tt class="py-lineno">485</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: A string containing the XML</tt> </tt>
<a name="L486"></a><tt class="py-lineno">486</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L487"></a><tt class="py-lineno">487</tt>  <tt class="py-line">                <tt class="py-comment">#print 'Saving state to XML: ' + fullPath</tt> </tt>
<a name="L488"></a><tt class="py-lineno">488</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-comment"># create DOM document</tt> </tt>
<a name="L489"></a><tt class="py-lineno">489</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">impl</tt> <tt class="py-op">=</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">dom</tt><tt class="py-op">.</tt><tt class="py-name">minidom</tt><tt class="py-op">.</tt><tt class="py-name">getDOMImplementation</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L490"></a><tt class="py-lineno">490</tt>  <tt class="py-line">                <tt class="py-name">doc</tt> <tt class="py-op">=</tt> <tt class="py-name">impl</tt><tt class="py-op">.</tt><tt class="py-name">createDocument</tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-string">"headset"</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
<a name="L491"></a><tt class="py-lineno">491</tt>  <tt class="py-line"> </tt>
<a name="L492"></a><tt class="py-lineno">492</tt>  <tt class="py-line">                <tt class="py-comment"># get root element</tt> </tt>
<a name="L493"></a><tt class="py-lineno">493</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">root</tt> <tt class="py-op">=</tt> <tt class="py-name">doc</tt><tt class="py-op">.</tt><tt class="py-name">documentElement</tt> </tt>
<a name="L494"></a><tt class="py-lineno">494</tt>  <tt class="py-line">                 </tt>
<a name="L495"></a><tt class="py-lineno">495</tt>  <tt class="py-line">                <tt class="py-comment"># save geoms in tumor, path</tt> </tt>
<a name="L496"></a><tt class="py-lineno">496</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-keyword">for</tt> <tt class="py-name">name</tt><tt class="py-op">,</tt> <tt class="py-name">geoms</tt> <tt class="py-keyword">in</tt> <tt class="py-name">zip</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="headset.model.Model.HeaDSETModel.PATH_SAVE" class="py-name" href="#" onclick="return doclink('link-60', 'PATH_SAVE', 'link-9');">PATH_SAVE</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="headset.model.Model.HeaDSETModel.TUMOR" class="py-name" href="#" onclick="return doclink('link-61', 'TUMOR', 'link-7');">TUMOR</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L497"></a><tt class="py-lineno">497</tt>  <tt class="py-line">                        <tt class="py-name">curNode</tt> <tt class="py-op">=</tt> <tt class="py-name">root</tt><tt class="py-op">.</tt><tt class="py-name">appendChild</tt><tt class="py-op">(</tt><tt class="py-name">doc</tt><tt class="py-op">.</tt><tt class="py-name">createElement</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L498"></a><tt class="py-lineno">498</tt>  <tt class="py-line">                        <tt class="py-keyword">for</tt> <tt class="py-name">geom</tt> <tt class="py-keyword">in</tt> <tt class="py-name">geoms</tt><tt class="py-op">:</tt> </tt>
<a name="L499"></a><tt class="py-lineno">499</tt>  <tt class="py-line">                                <tt class="py-name">curNode</tt><tt class="py-op">.</tt><tt class="py-name">appendChild</tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.Save()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#Save,Method headset.model.Model.HeaDSETModel.Save()=headset.model.Model.HeaDSETModel-class.html#Save,Method headset.model.RecordingBase.Recording.Save()=headset.model.RecordingBase.Recording-class.html#Save"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.Save
headset.model.Model.HeaDSETModel.Save
headset.model.RecordingBase.Recording.Save" class="py-name" href="#" onclick="return doclink('link-62', 'Save', 'link-62');">Save</a></tt><tt class="py-op">(</tt><tt class="py-name">doc</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L500"></a><tt class="py-lineno">500</tt>  <tt class="py-line">                 </tt>
<a name="L501"></a><tt class="py-lineno">501</tt>  <tt class="py-line">                 </tt>
<a name="L502"></a><tt class="py-lineno">502</tt>  <tt class="py-line">                <tt class="py-name">XML</tt> <tt class="py-op">=</tt> <tt class="py-name">doc</tt><tt class="py-op">.</tt><tt class="py-name">toprettyxml</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L503"></a><tt class="py-lineno">503</tt>  <tt class="py-line">                <tt class="py-name">doc</tt><tt class="py-op">.</tt><tt class="py-name">unlink</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-comment"># When you are finished with a DOM, you should clean it up. This is necessary because some versions of Python do not support garbage collection of objects that refer to each other in a cycle.</tt> </tt>
<a name="L504"></a><tt class="py-lineno">504</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">XML</tt> </tt>
</div><a name="L505"></a><tt class="py-lineno">505</tt>  <tt class="py-line">         </tt>
<a name="HeaDSETModel.Load"></a><div id="HeaDSETModel.Load-def"><a name="L506"></a><tt class="py-lineno">506</tt> <a class="py-toggle" href="#" id="HeaDSETModel.Load-toggle" onclick="return toggle('HeaDSETModel.Load');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#Load">Load</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">XML</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.Load-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.Load-expanded"><a name="L507"></a><tt class="py-lineno">507</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L508"></a><tt class="py-lineno">508</tt>  <tt class="py-line"><tt class="py-docstring">                        Load geoms from an xml string as created by self.Save</tt> </tt>
<a name="L509"></a><tt class="py-lineno">509</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L510"></a><tt class="py-lineno">510</tt>  <tt class="py-line"><tt class="py-docstring">                        @param XML: xml string created by self.Save</tt> </tt>
<a name="L511"></a><tt class="py-lineno">511</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L512"></a><tt class="py-lineno">512</tt>  <tt class="py-line">                <tt class="py-name">doc</tt> <tt class="py-op">=</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">dom</tt><tt class="py-op">.</tt><tt class="py-name">minidom</tt><tt class="py-op">.</tt><tt class="py-name">parseString</tt><tt class="py-op">(</tt><tt class="py-name">XML</tt><tt class="py-op">)</tt> </tt>
<a name="L513"></a><tt class="py-lineno">513</tt>  <tt class="py-line">                <tt class="py-name">root</tt> <tt class="py-op">=</tt> <tt class="py-name">doc</tt><tt class="py-op">.</tt><tt class="py-name">documentElement</tt> </tt>
<a name="L514"></a><tt class="py-lineno">514</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt class="py-name">subTreeName</tt><tt class="py-op">,</tt> <tt class="py-name">addFunction</tt> <tt class="py-keyword">in</tt> <tt class="py-name">zip</tt><tt class="py-op">(</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="headset.model.Model.HeaDSETModel.TUMOR" class="py-name" href="#" onclick="return doclink('link-63', 'TUMOR', 'link-7');">TUMOR</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="headset.model.Model.HeaDSETModel.PATH_SAVE" class="py-name" href="#" onclick="return doclink('link-64', 'PATH_SAVE', 'link-9');">PATH_SAVE</a></tt><tt class="py-op">)</tt> <tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="headset.model.Model.HeaDSETModel.AddToTumor" class="py-name" href="#" onclick="return doclink('link-65', 'AddToTumor', 'link-34');">AddToTumor</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="headset.model.Model.HeaDSETModel.AddToPath" class="py-name" href="#" onclick="return doclink('link-66', 'AddToPath', 'link-35');">AddToPath</a></tt><tt class="py-op">)</tt> <tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L515"></a><tt class="py-lineno">515</tt>  <tt class="py-line">                        <tt class="py-keyword">for</tt> <tt class="py-name">elem1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">doc</tt><tt class="py-op">.</tt><tt class="py-name">getElementsByTagName</tt><tt class="py-op">(</tt><tt class="py-name">subTreeName</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L516"></a><tt class="py-lineno">516</tt>  <tt class="py-line">                                <tt class="py-comment">##print 'Loading geoms from subtree:', elem1.tagName</tt> </tt>
<a name="L517"></a><tt class="py-lineno">517</tt>  <tt class="py-line"><tt class="py-comment"></tt>                                <tt class="py-keyword">for</tt> <tt class="py-name">elem2</tt> <tt class="py-keyword">in</tt> <tt class="py-name">elem1</tt><tt class="py-op">.</tt><tt class="py-name">childNodes</tt><tt class="py-op">:</tt> </tt>
<a name="L518"></a><tt class="py-lineno">518</tt>  <tt class="py-line">                                        <tt class="py-keyword">if</tt> <tt class="py-name">elem2</tt><tt class="py-op">.</tt><tt class="py-name">nodeType</tt> <tt class="py-op">==</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">dom</tt><tt class="py-op">.</tt><tt class="py-name">minidom</tt><tt class="py-op">.</tt><tt class="py-name">Node</tt><tt class="py-op">.</tt><tt class="py-name">ELEMENT_NODE</tt><tt class="py-op">:</tt> <tt class="py-comment"># ignore whitespace textnodes</tt> </tt>
<a name="L519"></a><tt class="py-lineno">519</tt>  <tt class="py-line">                                                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name" targets="Method headset.model.Model.HeaDSETModel._LoadGeom()=headset.model.Model.HeaDSETModel-class.html#_LoadGeom"><a title="headset.model.Model.HeaDSETModel._LoadGeom" class="py-name" href="#" onclick="return doclink('link-67', '_LoadGeom', 'link-67');">_LoadGeom</a></tt><tt class="py-op">(</tt><tt class="py-name">elem2</tt><tt class="py-op">,</tt> <tt class="py-name">addFunction</tt><tt class="py-op">)</tt> </tt>
</div><a name="L520"></a><tt class="py-lineno">520</tt>  <tt class="py-line"> </tt>
<a name="L521"></a><tt class="py-lineno">521</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel._LoadGeom"></a><div id="HeaDSETModel._LoadGeom-def"><a name="L522"></a><tt class="py-lineno">522</tt> <a class="py-toggle" href="#" id="HeaDSETModel._LoadGeom-toggle" onclick="return toggle('HeaDSETModel._LoadGeom');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#_LoadGeom">_LoadGeom</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">elem</tt><tt class="py-op">,</tt> <tt class="py-param">addFunction</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel._LoadGeom-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel._LoadGeom-expanded"><a name="L523"></a><tt class="py-lineno">523</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L524"></a><tt class="py-lineno">524</tt>  <tt class="py-line"><tt class="py-docstring">                        Creates a geom from the attributes described by elem, and call the method addFunction(newGeom).</tt> </tt>
<a name="L525"></a><tt class="py-lineno">525</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L526"></a><tt class="py-lineno">526</tt>  <tt class="py-line"><tt class="py-docstring">                        @param elem: DOM-element describing a geom.</tt> </tt>
<a name="L527"></a><tt class="py-lineno">527</tt>  <tt class="py-line"><tt class="py-docstring">                        @param addFunction: function accepting the geom as a single parameter.</tt> </tt>
<a name="L528"></a><tt class="py-lineno">528</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L529"></a><tt class="py-lineno">529</tt>  <tt class="py-line">                <tt class="py-comment">##print '  Loading', elem.tagName</tt> </tt>
<a name="L530"></a><tt class="py-lineno">530</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-comment"># map geom strings to class instances with default settings</tt> </tt>
<a name="L531"></a><tt class="py-lineno">531</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">mapping</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L532"></a><tt class="py-lineno">532</tt>  <tt class="py-line">                        <tt class="py-string">'HeaDSETCube'</tt> <tt class="py-op">:</tt>  <tt id="link-68" class="py-name"><a title="headset.model.HeaDSETCube'.HeaDSETCube" class="py-name" href="#" onclick="return doclink('link-68', 'HeaDSETCube', 'link-0');">HeaDSETCube</a></tt><tt class="py-op">(</tt><tt class="py-string">"Cube"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L533"></a><tt class="py-lineno">533</tt>  <tt class="py-line">                        <tt class="py-string">'HeaDSETSphere'</tt> <tt class="py-op">:</tt> <tt id="link-69" class="py-name"><a title="headset.model.HeaDSETSphere'.HeaDSETSphere" class="py-name" href="#" onclick="return doclink('link-69', 'HeaDSETSphere', 'link-1');">HeaDSETSphere</a></tt><tt class="py-op">(</tt><tt class="py-string">"Sphere"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L534"></a><tt class="py-lineno">534</tt>  <tt class="py-line">                        <tt class="py-string">'HeaDSETCylinder'</tt> <tt class="py-op">:</tt> <tt id="link-70" class="py-name"><a title="headset.model.HeaDSETCylinder'.HeaDSETCylinder" class="py-name" href="#" onclick="return doclink('link-70', 'HeaDSETCylinder', 'link-3');">HeaDSETCylinder</a></tt><tt class="py-op">(</tt><tt class="py-string">"Cylinder"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L535"></a><tt class="py-lineno">535</tt>  <tt class="py-line">                        <tt class="py-string">'HeaDSETCone'</tt> <tt class="py-op">:</tt> <tt id="link-71" class="py-name"><a title="headset.model.HeaDSETCone'.HeaDSETCone" class="py-name" href="#" onclick="return doclink('link-71', 'HeaDSETCone', 'link-2');">HeaDSETCone</a></tt><tt class="py-op">(</tt><tt class="py-string">"Cone"</tt><tt class="py-op">)</tt> </tt>
<a name="L536"></a><tt class="py-lineno">536</tt>  <tt class="py-line">                        <tt class="py-op">}</tt> </tt>
<a name="L537"></a><tt class="py-lineno">537</tt>  <tt class="py-line">                <tt class="py-name">geom</tt> <tt class="py-op">=</tt> <tt class="py-name">mapping</tt><tt class="py-op">[</tt><tt class="py-name">elem</tt><tt class="py-op">.</tt><tt class="py-name">tagName</tt><tt class="py-op">]</tt> </tt>
<a name="L538"></a><tt class="py-lineno">538</tt>  <tt class="py-line">                 </tt>
<a name="L539"></a><tt class="py-lineno">539</tt>  <tt class="py-line">                <tt class="py-comment"># add geom</tt> </tt>
<a name="L540"></a><tt class="py-lineno">540</tt>  <tt class="py-line"><tt class="py-comment"></tt>                <tt class="py-name">addFunction</tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L541"></a><tt class="py-lineno">541</tt>  <tt class="py-line"> </tt>
<a name="L542"></a><tt class="py-lineno">542</tt>  <tt class="py-line">                <tt class="py-name">xyz</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-string">'x'</tt><tt class="py-op">,</tt><tt class="py-string">'y'</tt><tt class="py-op">,</tt><tt class="py-string">'z'</tt><tt class="py-op">)</tt> </tt>
<a name="L543"></a><tt class="py-lineno">543</tt>  <tt class="py-line">                <tt class="py-name">rgb</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-string">'r'</tt><tt class="py-op">,</tt><tt class="py-string">'g'</tt><tt class="py-op">,</tt><tt class="py-string">'b'</tt><tt class="py-op">)</tt> </tt>
<a name="L544"></a><tt class="py-lineno">544</tt>  <tt class="py-line">                <tt class="py-name">name2function</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L545"></a><tt class="py-lineno">545</tt>  <tt class="py-line">                        <tt id="link-72" class="py-name" targets="Class headset.model.HeaDSETGeom'.HeaDSETGeom=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom" class="py-name" href="#" onclick="return doclink('link-72', 'HeaDSETGeom', 'link-72');">HeaDSETGeom</a></tt><tt class="py-op">.</tt><tt id="link-73" class="py-name" targets="Variable headset.model.HeaDSETGeom'.HeaDSETGeom.POSITION=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#POSITION,Variable headset.model.RecordingBase.RecordingAtom.POSITION=headset.model.RecordingBase.RecordingAtom-class.html#POSITION"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.POSITION
headset.model.RecordingBase.RecordingAtom.POSITION" class="py-name" href="#" onclick="return doclink('link-73', 'POSITION', 'link-73');">POSITION</a></tt> <tt class="py-op">:</tt> <tt class="py-op">(</tt><tt class="py-name">xyz</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetPosition
headset.peripherals.PlaybackController.PlayBackController.SetPosition" class="py-name" href="#" onclick="return doclink('link-74', 'SetPosition', 'link-37');">SetPosition</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L546"></a><tt class="py-lineno">546</tt>  <tt class="py-line">                        <tt id="link-75" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom" class="py-name" href="#" onclick="return doclink('link-75', 'HeaDSETGeom', 'link-72');">HeaDSETGeom</a></tt><tt class="py-op">.</tt><tt id="link-76" class="py-name" targets="Variable headset.model.HeaDSETGeom'.HeaDSETGeom.ORIENTATION=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#ORIENTATION,Variable headset.model.RecordingBase.RecordingAtom.ORIENTATION=headset.model.RecordingBase.RecordingAtom-class.html#ORIENTATION"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.ORIENTATION
headset.model.RecordingBase.RecordingAtom.ORIENTATION" class="py-name" href="#" onclick="return doclink('link-76', 'ORIENTATION', 'link-76');">ORIENTATION</a></tt> <tt class="py-op">:</tt> <tt class="py-op">(</tt><tt class="py-name">xyz</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetOrientation" class="py-name" href="#" onclick="return doclink('link-77', 'SetOrientation', 'link-39');">SetOrientation</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L547"></a><tt class="py-lineno">547</tt>  <tt class="py-line">                        <tt id="link-78" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom" class="py-name" href="#" onclick="return doclink('link-78', 'HeaDSETGeom', 'link-72');">HeaDSETGeom</a></tt><tt class="py-op">.</tt><tt id="link-79" class="py-name" targets="Variable headset.model.HeaDSETGeom'.HeaDSETGeom.SCALE=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SCALE,Variable headset.model.RecordingBase.RecordingAtom.SCALE=headset.model.RecordingBase.RecordingAtom-class.html#SCALE"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SCALE
headset.model.RecordingBase.RecordingAtom.SCALE" class="py-name" href="#" onclick="return doclink('link-79', 'SCALE', 'link-79');">SCALE</a></tt> <tt class="py-op">:</tt> <tt class="py-op">(</tt><tt class="py-name">xyz</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetScale" class="py-name" href="#" onclick="return doclink('link-80', 'SetScale', 'link-41');">SetScale</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L548"></a><tt class="py-lineno">548</tt>  <tt class="py-line">                        <tt id="link-81" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom" class="py-name" href="#" onclick="return doclink('link-81', 'HeaDSETGeom', 'link-72');">HeaDSETGeom</a></tt><tt class="py-op">.</tt><tt id="link-82" class="py-name" targets="Variable headset.model.HeaDSETGeom'.HeaDSETGeom.COLOR=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#COLOR"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.COLOR" class="py-name" href="#" onclick="return doclink('link-82', 'COLOR', 'link-82');">COLOR</a></tt> <tt class="py-op">:</tt> <tt class="py-op">(</tt><tt class="py-name">rgb</tt><tt class="py-op">,</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetColor" class="py-name" href="#" onclick="return doclink('link-83', 'SetColor', 'link-13');">SetColor</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L549"></a><tt class="py-lineno">549</tt>  <tt class="py-line">                        <tt class="py-op">}</tt> </tt>
<a name="L550"></a><tt class="py-lineno">550</tt>  <tt class="py-line">                 </tt>
<a name="L551"></a><tt class="py-lineno">551</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt class="py-name">name</tt><tt class="py-op">,</tt> <tt class="py-name">name_function</tt> <tt class="py-keyword">in</tt> <tt class="py-name">name2function</tt><tt class="py-op">.</tt><tt class="py-name">iteritems</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L552"></a><tt class="py-lineno">552</tt>  <tt class="py-line">                        <tt class="py-keyword">for</tt> <tt class="py-name">tmpElem</tt> <tt class="py-keyword">in</tt> <tt class="py-name">elem</tt><tt class="py-op">.</tt><tt class="py-name">getElementsByTagName</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L553"></a><tt class="py-lineno">553</tt>  <tt class="py-line">                                <tt class="py-name">values</tt> <tt class="py-op">=</tt> <tt id="link-84" class="py-name"><a title="headset.util.XmlUtil" class="py-name" href="#" onclick="return doclink('link-84', 'XmlUtil', 'link-5');">XmlUtil</a></tt><tt class="py-op">.</tt><tt id="link-85" class="py-name" targets="Function headset.util.XmlUtil.readAttributes()=headset.util.XmlUtil-module.html#readAttributes"><a title="headset.util.XmlUtil.readAttributes" class="py-name" href="#" onclick="return doclink('link-85', 'readAttributes', 'link-85');">readAttributes</a></tt><tt class="py-op">(</tt><tt class="py-name">tmpElem</tt><tt class="py-op">,</tt> <tt class="py-name">name_function</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-comment">#read the attribute(s) from XML</tt> </tt>
<a name="L554"></a><tt class="py-lineno">554</tt>  <tt class="py-line">                                <tt class="py-comment">###print values, '-', name</tt> </tt>
<a name="L555"></a><tt class="py-lineno">555</tt>  <tt class="py-line"><tt class="py-comment"></tt>                                <tt class="py-name">name_function</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt class="py-name">values</tt><tt class="py-op">)</tt> <tt class="py-comment"># set the attribute(s) on the geom</tt> </tt>
<a name="L556"></a><tt class="py-lineno">556</tt>  <tt class="py-line">                 </tt>
<a name="L557"></a><tt class="py-lineno">557</tt>  <tt class="py-line">                <tt class="py-name">name2function</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L558"></a><tt class="py-lineno">558</tt>  <tt class="py-line">                        <tt id="link-86" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom" class="py-name" href="#" onclick="return doclink('link-86', 'HeaDSETGeom', 'link-72');">HeaDSETGeom</a></tt><tt class="py-op">.</tt><tt id="link-87" class="py-name" targets="Variable headset.model.HeaDSETGeom'.HeaDSETGeom.OPACITY=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#OPACITY"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.OPACITY" class="py-name" href="#" onclick="return doclink('link-87', 'OPACITY', 'link-87');">OPACITY</a></tt> <tt class="py-op">:</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetOpacity" class="py-name" href="#" onclick="return doclink('link-88', 'SetOpacity', 'link-47');">SetOpacity</a></tt><tt class="py-op">,</tt> </tt>
<a name="L559"></a><tt class="py-lineno">559</tt>  <tt class="py-line">                        <tt id="link-89" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom" class="py-name" href="#" onclick="return doclink('link-89', 'HeaDSETGeom', 'link-72');">HeaDSETGeom</a></tt><tt class="py-op">.</tt><tt id="link-90" class="py-name" targets="Variable headset.model.HeaDSETGeom'.HeaDSETGeom.LABEL=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#LABEL"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.LABEL" class="py-name" href="#" onclick="return doclink('link-90', 'LABEL', 'link-90');">LABEL</a></tt> <tt class="py-op">:</tt> <tt class="py-name">geom</tt><tt class="py-op">.</tt><tt id="link-91" class="py-name" targets="Method headset.model.HeaDSETGeom'.HeaDSETGeom.SetLabel()=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#SetLabel"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.SetLabel" class="py-name" href="#" onclick="return doclink('link-91', 'SetLabel', 'link-91');">SetLabel</a></tt><tt class="py-op">,</tt> </tt>
<a name="L560"></a><tt class="py-lineno">560</tt>  <tt class="py-line">                        <tt class="py-op">}</tt> </tt>
<a name="L561"></a><tt class="py-lineno">561</tt>  <tt class="py-line">                 </tt>
<a name="L562"></a><tt class="py-lineno">562</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt class="py-name">name</tt><tt class="py-op">,</tt> <tt class="py-name">function</tt> <tt class="py-keyword">in</tt> <tt class="py-name">name2function</tt><tt class="py-op">.</tt><tt class="py-name">iteritems</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L563"></a><tt class="py-lineno">563</tt>  <tt class="py-line">                        <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt id="link-92" class="py-name"><a title="headset.util.XmlUtil" class="py-name" href="#" onclick="return doclink('link-92', 'XmlUtil', 'link-5');">XmlUtil</a></tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="headset.util.XmlUtil.readAttributes" class="py-name" href="#" onclick="return doclink('link-93', 'readAttributes', 'link-85');">readAttributes</a></tt><tt class="py-op">(</tt><tt class="py-name">elem</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-comment"># see comma behind name, tuple with 1 value</tt> </tt>
<a name="L564"></a><tt class="py-lineno">564</tt>  <tt class="py-line">                        <tt class="py-comment">###print value, '-', name</tt> </tt>
<a name="L565"></a><tt class="py-lineno">565</tt>  <tt class="py-line"><tt class="py-comment"></tt>                        <tt class="py-name">function</tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt class="py-name">value</tt><tt class="py-op">)</tt> </tt>
</div><a name="L566"></a><tt class="py-lineno">566</tt>  <tt class="py-line">                 </tt>
<a name="L567"></a><tt class="py-lineno">567</tt>  <tt class="py-line"> </tt>
<a name="HeaDSETModel.Reset"></a><div id="HeaDSETModel.Reset-def"><a name="L568"></a><tt class="py-lineno">568</tt> <a class="py-toggle" href="#" id="HeaDSETModel.Reset-toggle" onclick="return toggle('HeaDSETModel.Reset');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#Reset">Reset</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.Reset-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.Reset-expanded"><a name="L569"></a><tt class="py-lineno">569</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L570"></a><tt class="py-lineno">570</tt>  <tt class="py-line"><tt class="py-docstring">                        Resets the model. All geoms are removed and ID's are reset to 1.</tt> </tt>
<a name="L571"></a><tt class="py-lineno">571</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L572"></a><tt class="py-lineno">572</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-94" class="py-name" targets="Method headset.model.Model.HeaDSETModel.UnsetDicomModel()=headset.model.Model.HeaDSETModel-class.html#UnsetDicomModel"><a title="headset.model.Model.HeaDSETModel.UnsetDicomModel" class="py-name" href="#" onclick="return doclink('link-94', 'UnsetDicomModel', 'link-94');">UnsetDicomModel</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L573"></a><tt class="py-lineno">573</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt class="py-name">geom</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__path_geoms</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> <tt class="py-comment"># make a slice copy of the entire list, because it is modified</tt> </tt>
<a name="L574"></a><tt class="py-lineno">574</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="headset.model.Model.HeaDSETModel.RemoveFromPath" class="py-name" href="#" onclick="return doclink('link-95', 'RemoveFromPath', 'link-30');">RemoveFromPath</a></tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L575"></a><tt class="py-lineno">575</tt>  <tt class="py-line">                <tt class="py-keyword">for</tt> <tt class="py-name">geom</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__tumor_geoms</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L576"></a><tt class="py-lineno">576</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="headset.model.Model.HeaDSETModel.RemoveFromTumor" class="py-name" href="#" onclick="return doclink('link-96', 'RemoveFromTumor', 'link-29');">RemoveFromTumor</a></tt><tt class="py-op">(</tt><tt class="py-name">geom</tt><tt class="py-op">)</tt> </tt>
<a name="L577"></a><tt class="py-lineno">577</tt>  <tt class="py-line">                <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L578"></a><tt class="py-lineno">578</tt>  <tt class="py-line">                        <tt id="link-97" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-97', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"InstrumentRemoved"</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt><tt class="py-op">)</tt>    </tt>
<a name="L579"></a><tt class="py-lineno">579</tt>  <tt class="py-line">                        <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__instrument</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L580"></a><tt class="py-lineno">580</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__recordings</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L581"></a><tt class="py-lineno">581</tt>  <tt class="py-line">                <tt id="link-98" class="py-name"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom" class="py-name" href="#" onclick="return doclink('link-98', 'HeaDSETGeom', 'link-72');">HeaDSETGeom</a></tt><tt class="py-op">.</tt><tt id="link-99" class="py-name" targets="Variable headset.model.HeaDSETGeom'.HeaDSETGeom.GEOM_ID=headset.model.HeaDSETGeom%27.HeaDSETGeom-class.html#GEOM_ID"><a title="headset.model.HeaDSETGeom'.HeaDSETGeom.GEOM_ID" class="py-name" href="#" onclick="return doclink('link-99', 'GEOM_ID', 'link-99');">GEOM_ID</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
</div><a name="L582"></a><tt class="py-lineno">582</tt>  <tt class="py-line">                 </tt>
<a name="L583"></a><tt class="py-lineno">583</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.AddRecording"></a><div id="HeaDSETModel.AddRecording-def"><a name="L584"></a><tt class="py-lineno">584</tt> <a class="py-toggle" href="#" id="HeaDSETModel.AddRecording-toggle" onclick="return toggle('HeaDSETModel.AddRecording');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#AddRecording">AddRecording</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">recording</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.AddRecording-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.AddRecording-expanded"><a name="L585"></a><tt class="py-lineno">585</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L586"></a><tt class="py-lineno">586</tt>  <tt class="py-line"><tt class="py-docstring">                        Adds a recording to the model.</tt> </tt>
<a name="L587"></a><tt class="py-lineno">587</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L588"></a><tt class="py-lineno">588</tt>  <tt class="py-line"><tt class="py-docstring">                        @param recording: The recording to be stored.</tt> </tt>
<a name="L589"></a><tt class="py-lineno">589</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L590"></a><tt class="py-lineno">590</tt>  <tt class="py-line">                <tt class="py-keyword">print</tt> <tt class="py-string">"adding recording"</tt> </tt>
<a name="L591"></a><tt class="py-lineno">591</tt>  <tt class="py-line">                <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__recordings</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">recording</tt><tt class="py-op">)</tt> </tt>
<a name="L592"></a><tt class="py-lineno">592</tt>  <tt class="py-line">                <tt id="link-100" class="py-name"><a title="headset.Main.Publisher
headset.Publisher
headset.gui.Publisher
headset.gui.VTKComponent'.Publisher
headset.gui.VTKInteractor'.Publisher
headset.gui.VTKView'.Publisher
headset.model.HeaDSETCone'.Publisher
headset.model.HeaDSETCube'.Publisher
headset.model.HeaDSETCylinder'.Publisher
headset.model.HeaDSETDicom'.Publisher
headset.model.HeaDSETGeom'.Publisher
headset.model.HeaDSETSphere'.Publisher
headset.model.Publisher
headset.peripherals.OutputController'.Publisher
headset.peripherals.OutputInstrumentRecording'.Publisher
headset.peripherals.OutputJournal'.Publisher
headset.peripherals.Publisher
headset.util.Publisher
headset.util.Snake'.Publisher" class="py-name" href="#" onclick="return doclink('link-100', 'Publisher', 'link-6');">Publisher</a></tt><tt class="py-op">.</tt><tt class="py-name">sendMessage</tt><tt class="py-op">(</tt><tt class="py-string">"RecordingAdded"</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">recording</tt><tt class="py-op">,</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__recordings</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
</div><a name="L593"></a><tt class="py-lineno">593</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.GetRecording"></a><div id="HeaDSETModel.GetRecording-def"><a name="L594"></a><tt class="py-lineno">594</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetRecording-toggle" onclick="return toggle('HeaDSETModel.GetRecording');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetRecording">GetRecording</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">index</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetRecording-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetRecording-expanded"><a name="L595"></a><tt class="py-lineno">595</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L596"></a><tt class="py-lineno">596</tt>  <tt class="py-line"><tt class="py-docstring">                        Returns the recording belonging to a certain index. </tt> </tt>
<a name="L597"></a><tt class="py-lineno">597</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L598"></a><tt class="py-lineno">598</tt>  <tt class="py-line"><tt class="py-docstring">                        @param index: The index of the requested recording.</tt> </tt>
<a name="L599"></a><tt class="py-lineno">599</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L600"></a><tt class="py-lineno">600</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__recordings</tt><tt class="py-op">[</tt><tt class="py-name">index</tt><tt class="py-op">]</tt> </tt>
</div><a name="L601"></a><tt class="py-lineno">601</tt>  <tt class="py-line">                 </tt>
<a name="HeaDSETModel.GetNumberOfRecordings"></a><div id="HeaDSETModel.GetNumberOfRecordings-def"><a name="L602"></a><tt class="py-lineno">602</tt> <a class="py-toggle" href="#" id="HeaDSETModel.GetNumberOfRecordings-toggle" onclick="return toggle('HeaDSETModel.GetNumberOfRecordings');">-</a><tt class="py-line">        <tt class="py-keyword">def</tt> <a class="py-def-name" href="headset.model.Model.HeaDSETModel-class.html#GetNumberOfRecordings">GetNumberOfRecordings</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="HeaDSETModel.GetNumberOfRecordings-collapsed" style="display:none;" pad="+++" indent="++++++++++++"></div><div id="HeaDSETModel.GetNumberOfRecordings-expanded"><a name="L603"></a><tt class="py-lineno">603</tt>  <tt class="py-line">                <tt class="py-docstring">'''</tt> </tt>
<a name="L604"></a><tt class="py-lineno">604</tt>  <tt class="py-line"><tt class="py-docstring">                        Returns the numbger of recordings in the model.</tt> </tt>
<a name="L605"></a><tt class="py-lineno">605</tt>  <tt class="py-line"><tt class="py-docstring">                        </tt> </tt>
<a name="L606"></a><tt class="py-lineno">606</tt>  <tt class="py-line"><tt class="py-docstring">                        @return: The number of geoms. </tt> </tt>
<a name="L607"></a><tt class="py-lineno">607</tt>  <tt class="py-line"><tt class="py-docstring">                '''</tt> </tt>
<a name="L608"></a><tt class="py-lineno">608</tt>  <tt class="py-line">                <tt class="py-keyword">return</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__recordings</tt><tt class="py-op">)</tt> </tt>
</div></div><a name="L609"></a><tt class="py-lineno">609</tt>  <tt class="py-line"> </tt><script type="text/javascript">
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